Introducing Fabric Enterprise™ - a seamless, fully integrated NGS workflow from raw data to clinical report

Fabric Enterprise™ is an end-to-end computational genomics platform supporting high throughput panels, exomes and genomes for hereditary disease and oncology. Platform capabilities include: alignment and variant calling, annotation, curation, guideline-driven variant classification and interpretation from FASTQ or VCF files to clinical report.

  • Support for high throughput panels, exomes, and genomes
  • Diagnostic insights for hereditary disease and oncology
  • Sequencer-agnostic secondary analysis and data storage
  • Guideline-driven variant classification and reporting
  • Intelligent algorithms and machine learning methods
 Fabric Enterprise™ converts raw genomic data into high-quality clinical reports.

Fabric Genomics’ secondary and tertiary analysis tools utilize standard workflows and advanced algorithms for fast, accurate variant discovery, annotation, classification, interpretation and clinical reporting.

Fabric Enterprise™


data compression, graph technology, alignment, variant calling, genome informatics (vaast, phevor)


customer specific genomic data storage, classified variant database, reference databases, public databases, background genome databases

Fabric Enterprise™ - Components



Standard offers 10x faster FASTQ to VCF compared with the standard BWA-GATK tools, including 20-50x faster variant calling. Unlike GATK, Standard has no down-sampling of reads and is deterministic, even when run on multiple threads. This leads to more accurate scientific results and better overall efficiency during secondary analysis.


BioGraph is a compressed index file format that stores how all reads connect with one another. This enables accurate structural variation detection with a low false discovery rate. Multiple BioGraph files can be merged together into a single structure, allowing for accurate comparisons between cohorts and harmonization of disparate datasets.

Data Storage

Fabric Genomics offers advanced lossless compression technology that reduces the size of FASTQ and BAM files by 50%. This allows institutions to stretch their storage infrastucture further, delaying the need to purchase additional space.

VCF to Clinical Report


Fabric Genomics reduces turnaround time and operating costs using highly automated variant annotation, classification, and clinical reporting capabilities. Our lab director dashboards, ACMG guideline-driven variant scoring interface, batch processing functionality, proprietary algorithms, and 90+ annotations allow scientists to be consistent and confident in their variant classification and reporting.


Fabric Genomics’ industry-leading variant prioritization algorithms, VAAST (Variant Annotation, Analysis, and Search Tool) and Phevor (Phenotype Driven Variant Ontological Re-ranking tool) offer unparalleled specificity and accuracy in identifying the causal mutation(s) in high complexity situations like pediatric clinical odyssey cases and country sequencing projects. Our scientists have optimized large scale genomic data, delivering annotations of exomes in less than 10 seconds and genomes in less than 10 minutes.


Case-control studies can identify genes previously only found in familial studies, even when variants are extremely rare. Much larger sample sizes are needed to identify novel susceptibility genes with genome-wide significance. Variant prioritization algorithms like Fabric Genomics’ updated VAAST ranking algorithm can significantly improve statistical effect size estimates.

Fabric Enterprise™ - Key Benefits


Accuracy & Speed

Clinic-ready workflows and quality.

  • 90+ annotations from public and proprietary sources with extensive gene and variant content
  • Fast, accurate raw data analysis, variant calling, and annotation
  • Industry-leading speed: <10 min annotation of clinical genomes and <10 sec annotation of exomes
  • Structural variant detection for oncology and hereditary diseases


Security & Privacy

Comprehensive data and network security and regulatory compliance programs.

  • HIPAA and SSAE 16
  • ISO 27001
  • FDA 21 CFR part 11
  • FDA 21 CFR Part 820
  • Industry-standard data encryption
  • Anonymization of sequence data
  • CLIA


Integrated Intelligence

Algorithms, clinical standards, and technology to drive scientific accuracy and efficiency.

  • ACMG and AMP guideline implementation for germline and somatic variant classification
  • Variant ranking algorithms for individuals or population cohort analysis
  • Access to an expert network of variant scientists
  • Machine learning



Custom solutions for specific project needs.

  • Panel builder capability for custom test generation
  • White-labeled reporting and customizable lab workflows
  • Next generation graph technology for population reference genome construction


Hosting & Data Storage

Cloud and on-site storage, including lossless compression options.

  • Lossless compression of FASTQ/BAM and VCF files for later requery and review
  • Compress  FASTQ and BAM files to half of the original file size.


Data Sharing

Offering “Beacon”– an open web service, designed for collaboration between clinical laboratories and healthcare professionals without compromising patient privacy.

  • Intra-lab sharing of variant information.